The framework and majority of software development for the Symbiota Virtual Biota Software Project has been financially supported by several National Science Foundation (NSF) grants. A significant portion of development has also been performed in collaboration with several partnerships. Using an open source development model, several projects have taken the lead to develop particular modules in a manner that makes the new features available to the greater portal community.
- Networking Our Research Legacy: Infrastructure to Document, Manage, and Access Ecological Data Resources
- Active 1999-2003 (ABI-9983132)
- Investigators: Peter McCartney (PI), Nancy Grimm, Charles Redman, Timothy Craig, Corinna Gries
- Lead institution: Arizona State University
- Supplied initial support for the creation of the SEINet specimen search engine in 2001, which was the original prototype that later developed into the Symbiota Software project
- Symbiota, A Virtual Flora Model for the Southwestern United States
- Collaborative Research: ABI Development: Symbiota2: Enabling greater collaboration and flexibility for mobilizing biodiversity data
Projects with Secondary Support for Symbiota Development
- NSF BDI-0847966; PIs: Leslie Landrum, Corinna Gries (email@example.com); Lead institution: Arizona State University
- NSF EF-1115116: OCR/NLP tools, exsiccati management; PIs: Corinna Gries (firstname.lastname@example.org), Thomas Nash; Lead institution: University of Wisconsin – Madison
- NSF EF-1209149: Phenology and occurrence trait management; PIs: Patrick Sweeney (email@example.com),
Michael Donoghue; Lead institution: Yale University
- ASU/Smithsonian Tropical Research Institute collaboration: Reference Module; Specimen Mapping Tool; PIs: Nico Franz (firstname.lastname@example.org); Lead institution: Arizona State University, Smithsonian Tropical Research Insitute
- NSF EF-1207371: Filtered-Push module, Image Search Tool; PIs: Neil Cobb (Neil.Cobb@nau.edu), ; Lead institution: Northern Arizona University (SCAN TCN))
- NSF EF-1410069: iPlant image batch processing tools, Skeletal records submission tool, GeoLocate Community integration); PI: Zack Murrell (email@example.com), et al; Lead institution: Appalachian State University
- NSF DBI -1304924
- NSF EF-1410683: Darwin Core Archive transfer tool; PIs: Kenneth Cameron (firstname.lastname@example.org); Lead institution: University of Wisconsin – Madison
- New York Botanical Garden: Integration of SALIX OCR/NLP, batch OCR import tool; PI: Barbara Thiers (email@example.com)
- NSF DBI -1602081 Computer vision deep-learning neural net workflow, added functionality to Spatial Module; PI: Neil Cobb (Neil.Cobb@nau.edu); Lead institution: Northern Arizona University (LepNet TCN)
- NSF EF-1502735: Statistic reporting – ver. 2; PIs: Andrew Miller (firstname.lastname@example.org), Steven Stephenson, Deborah Lewis, Thorsten Lumbsch, Robert Luecking; Lead institution: University of Illinois
Partnerships and Institutional Support
Current development focuses on the creation and expansion of various data management features and modules so that they are fully integrated within the software framework. A number of modules are independent of the Symbiota2 Project. Collaborative development using open-source philosophy ensures the greater community will benefit from the new and improved features. Below is a list of some of the partners that have supported software development and code submission within the Symbiota code repository.
- Julie Ann Wrigley Global Institute of Sustainability (GIOS) at Arizona State University: Project and server support since the project initially began in 2000.
- Arizona State University School of Life Sciences and ASU Herbarium: Long-term data support for the SEINet data portal. Financial support for the development and co-development of several core management interfaces.
- GeoLocate: Nelson Rios (email@example.com), A Platform for Georeferencing Natural History Collections Data
- SCAN: Neil Cobb (Neil.Cobb@nau.edu); Funding support for the development and co-development of several core management interfaces through SCAN and LepNet TCNs and Symbiota2 project.
- University of Arizona Herbarium (ARIZ): Michelle McMahon (firstname.lastname@example.org); co-development of several specimen management interfaces (specimen loan and exchange modules, label printing, specimen management, etc).
- Intermountain Herbarium (UTC): Mary Barkworth (Mary.Barkworth@usu.edu), Expansion and improvement of various specimen management modules.
- Fieldguide: Andre Poremski, (email@example.com), Taylan Pince, (firstname.lastname@example.org), Fergal Wals, Infrastructure Engineer (email@example.com). Computer-aided identification
- Spatial Module: Chris Neefus (Chris.Neefus@unh.edu) The Macroalgal TCN supporte Ben Brandt to develop this year-long project.